Members of the Lab

Current

Research Assistant Professor

Michael Kio

Ph.D. Cranfield University, United Kingdom (2015)
Aerospace Research (Computational Fluid Dynamics)

Research Topics

Dr Kio’s current research focuses on developing enhanced fouling release coating formulation. His research interests also include surface wettability and nanoparticle interaction with lipid bilayers for studies of drug delivery implementing molecular dynamics.

Postdoctoral

Min-Kang Hsieh

Ph.D. Columbia University (2018)
Chemical Engineering M.S. National Taiwan University, Taipei, Taiwan (Chemical Engineering, 2008)

Research Topics

Min-Kang's research focuses on two areas of interest. He is doing research on some COVID-19 associated proteins that form oligomers that are important for the virus infection and he is probing the mechanism and structure in collaboration with Dr. Berger's lab at UVA. Min-Kang is also doing work on lipid membrane asymmetry with a focus on the inner membrane of Gram Negative bacteria.

Kyle Kihn

Ph.D. Univeristy of Maryland - Baltimore
Pharmaceutical Sciences (2023)
B.A. Goucher College (Biochemistry and Molecular Biology, 2018)

Research Topics

Kyle is a postdoc in Dr. Tina Brelidze's lab at Georgetown University and is part of the lab in this joint experimental and computational postdoc focusing on ion channel research and machine learning of these channels.

Graduate Students

	Tejaswi Tammareddy Ph.D. Student at University of Maryland-College Park (2019-) M.S. Student at University of Maryland-College Park (2016-2019) B.S. Andhra University, India Research Topics Tejaswi is interested in using simulations to probe biotech applications. Her current research is on CDK5 with its importance to neurological diseases. She is working with Dr. Cardone (NIST) on investigating inhibotors of the toxic p25 cleaved product of CDK5.
	Jiyeon Min Ph.D. Student at University of Maryland-College Park (Biophysics; 2019-) B.Eng. Kwangwoon University, Seoul, South Korea (Electronics & Communication Engineering, 2017) Research Topics Jiyeon is working as a co-advised student in Dr. Brooks' Lab at NIH. She is currently a biophysics student in my lab focused on measuring the free energy of binding of inositol molecules to model Arg peptides. Our goal is to compare with ITC experiments and adjust the force field if necessary.
	Jessica Bodosa Ph.D. student at University of Maryland, College Park (Biophysics, 2020-) B.S./M.S. Indian Institute of Science, Bangalore (Biology, 2015-2020) Research Topics Jessica has been a Biophysics rotation student in the lab focusing on the dimerization of the EmrE protein. She will also be starting research on metal ion binding to cell membranes.
	Joshua Lucker M.S./Ph.D. student at University of Maryland, College Park (Biophysics, 2020-) UM-Baltimore County (B.S. Chemistry, B.A. Math and minor in Music, 2014-2018) Research Topics Joshua is working on extending the CHARMM36UAr model to sphingolipids and testing this force field with bilayer mixtures containing cholesterol.
	Anthony Pane Ph.D. student at University of Maryland, College Park (Biophysics, 2021-) B.S./B.A. University of Rochester (Computational Biology/History, 2015-2019) Research Topics Anthony is co-Advised by Dr. Richard Pastor (NIH/NHLBI) and is working on optimizatation of the phosphoserine lipid force field as his first project.
	Kinjal Mondal Ph.D. student at University of Maryland, College Park (Biophysics, 2022-) B.S./M.S.. Indian Institute of Science Education and Resarch (IISER)-Prune, Chemistry, 2017-2022) Research Topics Kinjal started as a rotation student Fall 2022 and has joined the Klauda lab in Spring 2023. His work focuses on developing data on Lyase proteins to understand how these are involved in bacterial infections and how these can be used to reduce feed stock to produce chemicals. His work utilizes molecular simulation and machine learning for enzyme design.
	Marlen Toktomamatov Ph.D. student at University of Maryland, College Park (Biochemistry, 2023-) B.S. University of Rochester (Computational Biology, 2019-2023) Research Topics Marlen started as a rotation student Spring 2024 and has joined the Klauda lab April 2024. His work currently focuses on determining the free energy of model peptide bindings to cellular membranes.
	Niamh Carlin B.E./M.E.. student at University College Dublin (2020-current) Research Topics Niamh joins UMD as part of her M.E. program to gain a 12-week experience in research. She is doing a joint project with Prof. Karlsson on cell penetrating peptides (CPPs) where she will be modeling the CPPs and suggesting mutations to measure in the wet lab.

Undergraduate Students

	Dai-Bao Van B.S. Chemistry (May 2021) Postbac at UMD Research Topics Dai-Bao is working on modeling archeal membranes with ether-branched lipids as well as simulating AQP0 and its cataract forming mutants
	Vincent Zhao Computer Science Class of 2025 Research Topics Vincent is focusing on developing membranes with Ladderane lipids for an interesting class of organisms that live in extreme conditions.
	Sukrit Mangla Computer Science Class of 2026 Research Topics Sukrit is finishing up his training and will be starting on a project associated with CDK5 under the advisement of Tejaswi.
	Nicholas Dadzie Biochemistry Class of 2024 Research Topics Nicholas has been working on modeling cell membranes with a future research project TBD
	Nida Shah Bioengineering Class of 2025 Research Topics Nida is finishing up her training and will be starting on a project associated with CDK5 under the advisement of Tejaswi. This is part of the BIOE honor's program.
	Tanya Budhiraja Bioengineering Class of 2025 Research Topics Tanya has been finishing up her training and has started working on a research project involving an accessory protein of SARS-CoV-2 and studying how it localizes to certain parts of the host cell. This is part of the BIOE honor's program.
	Abhi Senthikumar Chemical Engineering Class of 2026 Research Topics Abhi initially worked on simulations of cancer cell membranes with Dr. Kio. He has sense focused on membrane-active peptides in collaboration with Prof. Karlsson
	Emily Davies Computer Science Class of 2025 Research Topics Emily is currently working with Kinjal on using machine learning to predict ligand binding affinities to a protein using Graph Neural Networks with more sparse data.
	Daniel Erickson Bioengineering Class of 2025 Research Topics Dan is focused on developing models membranes of microglia towards interest in interactions with the Abeta-peptide and Alzheimer's Disease with Neelay.
	Neelay Sachdevan Bioengineering Class of 2026 Research Topics Neelay is focused on developing models membranes of microglia towards interest in interactions with the Abeta-peptide and Alzheimer's Disease with Dan.
	Om Tailor Computer Science (Minor in Computational Finance) Class of 2026 Research Topics Om has been working with Kyle on collecting data and developing a machine learning model toward drug design to an ion channel protein..
	Arnav Srivastava Computer Science & Math Class of 2027 Research Topics Arnav has been working with Kinjal on developing a machine learning model for enzyme design.
	Adam Teixeira Biochemistry Class of 2025 Research Topics Adam has been modeling simple membranes.
	Evan Roeteringa Bioengineering Class of 2025 Research Topics Evan has been looking at developing membrane models for leukemia and understanding their biophysical properties.