When working with a pure culture, one must operate under the assumption that contaminating microorganisms are present everywhere in the open environment, a fact demonstrated in our previous experiment. It is important to know intuitively when sterile tools or glassware must be used and when sterilization is not necessary. This requires the ability to distinguish clearly the sterile side from the nonsterile side. In this experiment, the interior of the shaker flask is the sterile portion of the system. Anything that is that part of the system and anything that ever comes in direct contact with that part of the system must be sterile. Thus, the nutrient in the shaker flask before inoculation must be sterile, which in turn requires that the reservoir storing the filtered nutrient is sterile and that the entire process of dispensing the nutrient from the medium jar to the shaker flask is carried out aseptically. In addition, items that enter the shaker flask such as the cotton plug, inoculation loop, sampling pipets, and even air must all be sterile.
Most practical industrial fermentation processes are based on complex media because of the cost and the choice of the nutrients and the ease of nutrient preparation. For example, complex media for yeast fermentation can be easily prepared in a lab by following the same recipe as that used in the YPG agar, minus the agar: 5g/l yeast extract, 10g/l Peptone, and 5g/l glucose. However, the use of complex media is discouraged in the fundamental studies of fermentation kinetics because of the possibility of variations in the nutrient composition from run to run. For example, the exact content of a yeast extract preparation is not known, and its nutritional quality may vary from batch to batch. On the other hand, a defined medium can be reproduced time after time to ensure the reproducibility of biochemical experiments. The disadvantage of a defined medium is that there is always the possibility of missing some important growth factors. The formulation of a defined medium is often a tedious process of trial and error. However, a well formulated defined medium can support the healthy growth and maintenance of cells as effectively as, or sometimes superior to, a complex one. A defined medium will be used in this experiment.
Instead, membrane filtration will be used to sterilize the nutrient in this experiment. This can be accomplished by drawing the nutrient from a mixing jar and forcing it through an in-line filter (0.2 µm pore size) either by gravity or with a peristaltic pump. See Figure 1. The sterilized medium is fed into an autoclaved nutrient jar with a rubber stopper fitted with a filtered vent and a hooded sampling port. Do not overfill the nutrient jar, for the nutrient will be forced out of the venting filter and wet it. A wet venting filter must be aseptically replaced with another dry sterile one. Otherwise, the wet filter will support the unwarranted proliferation of a wide range of microorganisms which will soon destroy the filter membrane and enter into the nutrient jar and contaminate the broth. For the same reason, soon after the filling process is completed, clamp the tubing at position "A" as indicated in Figure 1, disconnect the in-line nutrient filtration unit, and wash the residual nutrient from the newly exposed part of the tubing. If the nutrient filter is to be reused, wash and autoclave it before it is destroyed by the microbial growth either due to clogging or breaking of the membrane.
The hooded sampling port consists of a tubing reaching into the bottom of the nutrient jar and a rubber bulb on the side. Normally, a sampling bottle is attached to the sampling port to keep its tip airtight and sterile. When the rubber bulb is squeezed, the air in the sampling bottle is forced into the nutrient jar. When the bulb is released, nutrient equal to the volume of the displaced air is sucked up the sampling tube and is collected in the sampling bottle. A sterile medium bottle with the same cap thread size may be attached to the sampling port in place of a sampling bottle if fermentation is to be conducted directly in the medium bottle or if it is more convenient to store the media in smaller bottles, each holding enough for one or two shaker flasks. The content from the media bottles may later be poured into shaker flasks as needed. Alternatively, a sterilized flask may be placed under the exposed sampling tube. Applying pressure to the vent will force liquid out from the jar into the flask. Flame both the sampling port and the mouth of the sterile sampling bottle before screwing on the sampling bottle.
Although the turbidity in the nutrient jar may be due to the precipitation of some of the nutrient components, it is almost always due to the presence of contaminants. At the first sign of contamination, either totally kill the contaminants by autoclaving or reduce the viability by adding bleach solutions. Discard the contents only after sanitization.
The setup in Figure 1 is useful for preparing a relatively large volume of sterile nutrient. A simpler setup consisting of a vented filtration flask as shown in Figure 2 may be desired if the quantity needed is not too large.
---------------------------- Run Carbon Source Weight ---------------------------- A Ethanol 5.0 g/l B Glucose 5.0 g/l C Sucrose 5.0 g/l D Glucose 2.5 g/l Sucrose 2 5 g/l ----------------------------
Composition of Defined Medium for Baker's Yeast -------------------------------------------- Compound Concentration -------------------------------------------- MgCl2*6H2O 0.52 g/l (NH4)2SO4 12.0 g/l H3PO4 (85%) 1.6 ml/l KCl 0.12 g/l CaCl2*2H2O 0.2 g/l NaCl 0.06 g/l MnSO4*H2O 0.024 g/l CaSO4*5H2O 0.0005 g/l H3BO3 0.0005 g/l Na2MoO4*2H2O 0.002 g/l NiCl 0.0025 mg/l ZnSO4*7H2O 0.012 g/l CoSO4*7H2O 0.0023 mg/l KI 0.0001 g/l FeSO4(NH4)2SO4*6H2O 0.035 g/l myo-Inositol 0.125 g/l Pyridoxine-HCl (Vitamin B6) 0.00625 g/l Ca-n-Pantothenate 0.00625 g/l Thiamine-HCl (Vitamin B1) 0.005 g/l Nicotinic Acid 0.005 g/l D-Biotin (Vitamin H) 0.000125 g/l Carbon Source (e.g. Glucose) 0-50 g/l EDTA 0.1 g/l --------------------------------------------
Mineral Stock Solution (100X) ----------------------------- Compound Weight-Volume ----------------------------- H3PO4 (85%) 160. ml KCl 12.00 g CaCl2*2H2O 20.00 g NaCl 6.00 g MnSO4*H2O 2.40 g CaSO4*5H2O 0.05 g H3BO3 0.05 g Na2MoO4*2H2O 0.20 g NiCl 0.25 mg ZnSO4*7H2O 1.20 g CoSO4*7H2O 0.23 mg KI 0.01 g ----------------------------- Add water to 1 liter
Vitamin Stock Solution (100X) -------------------------------- Compound Weight-Volume -------------------------------- myo-Inositol 12.5 g Pyridoxine-HCl 0.625 g Ca-n-Pantothenate 0.625 g Thiamine-HCl 0.5 g Nicotinic Acid 0.5 g D-Biotin 0.0125 g -------------------------------- Add water to 1 liter
Normal Strength Working Nutrient Solution ----------------------------------------------- Compound Weight-Volume ----------------------------------------------- Phthalic acid, monopotassium salt 0.20 g MgCl2*6H2O 0.52 g EDTA 0.1 g (NH4)2SO4 12.00 g Mineral Stock Solution 10. ml FeSO4(NH4)2SO4*6H2O 0.035 g Vitamin Stock Solution 10. ml Carbon Source (e.g. Glucose) 0-50 g KOH (for pH=5.0) 1.62 g ----------------------------------------------- Add water to 1 liter Adjust pH to 5.00 with 1N KOH & 1N HCl solutions
O.D. = 0.123 X 6 - 0.214 = 0.524
SHAKER FLASK A (5 g/l Ethanol) ----------------------------------------------------------------- Nominal Time Name Sample # Actual Time pH O.D. ----------------------------------------------------------------- 3/24 12am Inoculation A1 6am A2 9am A3 12pm A4 3pm A5 6pm A6 9pm A7 ---------------------------------------------------------------- 3/25 12am A8 3am A9 6am A10 9am A11 12pm A12 3pm A13 6pm A14 -----------------------------------------------------------------
SHAKER FLASK B (5 g/l Glucose) ----------------------------------------------------------------- Nominal Time Name Sample # Actual Time pH O.D. ----------------------------------------------------------------- 3/24 12am Inoculation B1 6am B2 9am B3 12pm B4 3pm B5 6pm B6 9pm B7 ---------------------------------------------------------------- 3/25 12am B8 3am B9 6am B10 9am B11 12pm B12 3pm B13 6pm B14 -----------------------------------------------------------------
SHAKER FLASK C (5 g/l Sucrose) ----------------------------------------------------------------- Nominal Time Name Sample # Actual Time pH O.D. ----------------------------------------------------------------- 3/24 12am Inoculation C1 6am C2 9am C3 12pm C4 3pm C5 6pm C6 9pm C7 ---------------------------------------------------------------- 3/25 12am C8 3am C9 6am C10 9am C11 12pm C12 3pm C13 6pm C14 -----------------------------------------------------------------
SHAKER FLASK D (5 g/l Sucrose + 5 g/l Glucose) ----------------------------------------------------------------- Nominal Time Name Sample # Actual Time pH O.D. ----------------------------------------------------------------- 3/24 12am Inoculation D1 6am D2 9am D3 12pm D4 3pm D5 6pm D6 9pm D7 ---------------------------------------------------------------- 3/25 12am D8 3am D9 6am D10 9am D11 12pm D12 3pm D13 6pm D14 -----------------------------------------------------------------